Tutorials and protocols

General

Unix, Git and Python

• Introduction to Unix workshop
• Using Git and Github for revision control
• Python Overview

HPC

• Introduction to HPC

GVL

• Launching a Personal GVL Server

Galaxy

• Introduction to Galaxy
• Galaxy workflows
• Introduction to GenomeSpace

Science

Next Generation Sequencing

• NGS Overview
• Alignment using BWA

RNA-Seq

• RNA-Seq Experimental Design
• RNA-Seq Differential Gene Expression - Basic
• RNA-Seq Differential Gene Expression - Advanced

Variant Detection

• Introduction to Variant Calling using Galaxy
• Variant Detection Advanced

Assembly

Tutorial

• Microbial de novo Assembly for Illumina Data

Protocol

• De Novo Genome Assembly

Proteomics

Tutorial

• Identifying proteins from mass spectrometry data